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Sam John, Ph.D.

Sam John, Ph.D.

  • Center for Cancer Research
  • National Cancer Institute
  • Building 37, Room 1108
  • Bethesda, MD 20814-4254
  • 240-760-7601
  • 240-541-4489
  • sam.john@nih.gov
Technical Laboratory Manager
Laboratory of Genome Integrity

RESEARCH SUMMARY

Dr. John's research interests have focused on understanding how the organization of the genome is regulated and linked to regulatory processes. As a post-doctoral fellow, he developed platforms for the purification and characterization of novel multi-subunit chromatin modifying and remodeling activities. During his tenure as a staff scientist, Dr. John developed cutting-edge and innovative protocols to map chromatin structure by coupling traditional biochemical procedures with high throughput genome-wide approaches to identify regulatory regions globally. His contributions led to some of the first maps that detailed regulatory regions and helped define the accessible chromatin landscape and the regulatory language encoded in transcription factor footprints across the human genome. These studies have laid the foundation for a deeper understanding of sequence information in both physiological and pathological states.  

Areas of Expertise

Chromatin Biology
Genomics
Nuclear Receptors
Transcription
Laboratory Management

Publications

Selected Recent Publications

END-seq: An Unbiased, High-Resolution, and Genome-Wide Approach to Map DNA Double-Strand Breaks and Resection in Human Cells

Wong N, John S, Nussenzweig A, Canela A.
Methods Mol Biol. 2153:9-31: 2021. [ Book Chapter ]

Suppressing proteasome mediated processing of topoisomerase II DNA-protein complexes preserves genome integrity

Sciascia N, Wu W, Zong D, Sun Y, Wong N, John S, Wangsa D, Ried T, Bunting SF, Pommier Y, Nussenzweig A.
Elife. 14:9:e53447: 2020. [ Journal Article ]

Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters

Cremer M, Schmid VJ, Kraus F, Markaki Y, Hellmann I, Maiser A, Leonhardt H, John S, Stamatoyannopoulos J, Cremer T.
Epigenetics Chromatin. 10(1):39: 2017.

Replication fork stability confers chemoresistance in BRCA-deficient cells

Chaudhuri AR, Callen E, Ding X, Gogola E, Duarte AA, Lee JE, Wong N, Lafarga V, Calvo JA, Panzarino NJ, John S, Day A, Crespo AV, Shen B, Starnes LM, de Ruiter JR, Daniel JA, Konstantinopoulos PA, Cortez D, Cantor SB, Fernandez-Capetillo O, Ge K, Jonkers J, Rottenberg S, Sharan SK, Nussenzweig A.
Nature. 535(7612):382-7: 2016. [ Journal Article ]

Role of DNA Methylation in Modulating Transcription Factor Occupancy

Maurano MT, Wang H, John S, Shafer A, Canfield T, Lee K, Stamatoyannopoulos JA.
Cell Rep. 12(7):1184-95: 2015. [ Journal Article ]